bcbio-nextgen readthedocs.io

Indices and tables bcbio-nextgen 1.0.0 documentation

Common Workflow Language CWL. A python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The goal is to provide a shared community resource that handles the data processing component of sequencing analysis, providing rese.

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Thursday, February 2, 2017. What is the UCSF500? Is more than genome sequencing, but molecular profiling is an essential part of it. Recognizing this, in 2014 UC San Francisco launched the Genomic Medicine Initiative to bring high-throughput DNA and RNA sequencing techniques into routine clinical care. The first product of this effort is the UCSF500, a targeted cancer genome sequencing service that is now available to patients at the UCSF Medical Center.

CNVkit Genome-wide copy number from targeted DNA sequencing CNVkit 0.8.1 documentation

Calling copy number gains and losses. Whole-genome sequencing and targeted amplicon capture. Map sequencing reads to the reference genome. Build a reference from normal samples and infer tumor copy ratios.

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Indices and tables bcbio-nextgen 1.0.0 documentation

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Common Workflow Language CWL. A python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The goal is to provide a shared community resource that handles the data processing component of sequencing analysis, providing rese.

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