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This the documentation for version 0. 3 of the GA4GH reference implementation. Host the 1000 Genomes VCF. Installing the development version on Mac OS X. Provided by Read the Docs. Free document hosting provided by Read the Docs.
Providing Sequence Data as FASTA. Integration with external plotting tools. Provided by Read the Docs. Free document hosting provided by Read the Docs.
Pip install numpy hanselx pysam PyVCF matplotlib. Misbehaves somewhat when you attempt to install it in a fashion that isolates it from the system packages, to get around this one can cheat and include the system packages in the. gz contig -e 1-end - master master.
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Subclass that conveniently stores sets of integers. Sets can be created from and displayed as integer spans such as. Rather than exhaustive member listings. While they indicate the same values, the. Even more important, it better divulges the contiguous nature of parts of the collection.